Four diagrams matter for internal linking: (1) Tree diagram — shows click depth from your home page. (2) Heat map — shows link distribution and authority concentration. (3) Flow simulation — shows how PageRank moves through your site. (4) Cluster map — shows thematic grouping of your content. Use draw.io for tree and cluster diagrams, Google Sheets for heat maps, and Gephi for flow simulations. These visuals help you plan, diagnose, and communicate your strategy.
- The tree diagram shows click depth. Create it to find buried PVNs and understand your hierarchy.
- The heat map shows link distribution. Create it to see where authority is going and identify waste.
- The flow simulation shows PageRank movement. Create it to visualize authority flow and find bottlenecks.
- The cluster map shows thematic grouping. Create it to understand your content coverage and identify weak clusters.
- Use free tools. draw.io for tree and cluster diagrams, Google Sheets for heat maps, Gephi for flow simulations.
- Diagrams reveal patterns tables hide. Visuals make imbalances and problems obvious.
- Update diagrams quarterly. Your site changes, and so should your visuals.
- Use diagrams to communicate. They're powerful tools for explaining your strategy to stakeholders.
- Don't create diagrams for their own sake. Use them to identify actions. A diagram without action is just decoration.
Chapter 9: Diagrams You Need to Create
A picture is worth a thousand rows of spreadsheet data.
I've spent countless hours staring at spreadsheets of internal link data. They're useful. They're necessary. But they're not intuitive. Patterns that are obvious in a visual are invisible in a table.
That's why diagrams matter.
In this chapter, I'll show you four diagrams I create for every internal linking project. Each one serves a different purpose:
- Tree Diagram — For understanding click depth and hierarchy.
- Heat Map — For seeing link distribution and authority concentration.
- Flow Simulation — For visualizing PageRank movement.
- Cluster Map — For understanding thematic grouping.
I'll show you how to create each one with free tools, how to interpret what you see, and how to use the insights to improve your site.
Let's start with the most foundational diagram.
Diagram 1: Tree Diagram (Click Depth Hierarchy)
What It Represents:
Your site's structure from the home page down, with each level showing how many clicks it takes to reach a page.
Why You Need It:
- Identifies pages that are buried too deep.
- Shows where your hierarchy is working and where it's breaking.
- Helps you plan structural changes.
How to Create It:
Tool: draw.io (free, online at https://app.diagrams.net/)
Step-by-Step:
- Open draw.io and select "Create New Diagram."
- From the left sidebar, choose "Advanced" and drag a "Tree" shape onto the canvas.
- The root node is your home page. Add child nodes for each main category.
- Add subsequent levels (subcategories, products, articles) following your actual hierarchy.
- Color-code PVNs in green and pages deeper than 3 clicks in red.
- Export as PNG or PDF.
Alternative: Use Screaming Frog's "Crawl Tree Graph" view. It's less customizable but faster.
What to Look For:
- PVNs in red. If your PVNs are deeper than 3 clicks, you have a problem.
- Deep sections. If entire sections are deep, consider restructuring or adding direct links.
- Flat spots. If your site is too flat (everything is 1-2 clicks), you might have too many links from the home page.
How to Interpret It:
A healthy tree diagram has most PVNs within 3 clicks. The hierarchy is logical and shallow where it matters. Pages that don't need to be found (legal pages, administrative pages) can be deeper.
A Real Example:
I created a tree diagram for an ecommerce client. Their home page linked to 12 categories. Each category linked to 20 subcategories. Each subcategory linked to 50 products. Product pages were at click depth 4. Products that should have been at depth 2 or 3 were buried.
We added direct links from the home page to top-selling products and from category pages to featured products. The average depth for PVNs dropped from 4.2 to 2.7.
Diagram 2: Heat Map of Internal Links
What It Represents:
A bubble chart where each bubble is a page. The size indicates the number of internal links pointing to that page. The color indicates authority (DR/PA).
Why You Need It:
- Identifies which pages are getting the most link equity.
- Shows if authority is going to PVNs or to irrelevant pages.
- Reveals imbalances in link distribution.
How to Create It:
Tool: Google Sheets (free) or Google Data Studio.
Step-by-Step (Google Sheets):
- Create a table with columns: URL, Internal Links (from Screaming Frog), DR/PA (from Ahrefs or Moz), and Organic Traffic (from Search Console).
- Select the data and go to Insert > Chart > Bubble Chart.
- Configure: X-axis = DR/PA, Y-axis = Internal Links, Bubble size = Organic Traffic.
- PVNs should stand out visually (large bubbles in the upper-right corner).
Alternative: Use Data Studio for more polished visuals.
What to Look For:
- PVNs that are small. If your PVNs have small bubbles (few internal links), they need more attention.
- Irrelevant pages that are large. If pages that don't matter have big bubbles, authority is being wasted.
- Clusters. Are similar pages grouped together in the chart?
How to Interpret It:
In a healthy heat map, PVNs are the largest bubbles, located in the upper-right (high authority, many links). Irrelevant pages are small and located in the lower-left. If you see the opposite, you have a problem.
A Real Example:
A client's heat map showed their contact page as a giant bubble. Their product pages were small. The contact page had 47 internal links. The top product page had 3. We reduced links to the contact page (from 47 to 12) and added links to product pages. Within 60 days, product page traffic increased by 22%.
Diagram 3: PageRank Flow Simulation
What It Represents:
A node diagram where arrows between pages show how PageRank flows. Arrow thickness represents the amount of authority flowing.
Why You Need It:
- Shows where authority is concentrated.
- Identifies bottlenecks (pages that receive a lot but don't redistribute).
- Reveals pages that are disconnected from the flow.
How to Create It:
Tool: Gephi (free desktop app, https://gephi.org/).
Step-by-Step:
- Export your link data from Screaming Frog as a CSV with columns: Source, Target, Weight (number of links or estimated DR).
- Import the CSV into Gephi.
- Run the "Force Atlas 2" layout algorithm to visualize the graph.
- Adjust node size based on "In-Degree" (number of incoming links).
- Adjust node color based on DR/PA.
- Export the visualization.
Alternative: Use a simpler manual diagram in draw.io if you're not comfortable with Gephi. It's less accurate but still useful.
What to Look For:
- Thick arrows going to irrelevant pages. Authority is being wasted.
- Thin arrows going to PVNs. Authority is not reaching your most important pages.
- Pages with no incoming arrows. These are orphans.
- Pages with many incoming arrows but few outgoing. These are dead ends or authority sinks.
How to Interpret It:
In a healthy flow simulation, thick arrows go from high-authority pages to PVNs. Authority circulates through the site rather than pooling in dead ends. Every PVN receives at least some flow.
A Real Example:
I used Gephi with a client who had 500+ pages. The flow simulation showed authority pooling on their blog homepage (which was DR 45) and not flowing to product pages. We added links from the blog homepage to top product categories. Within 90 days, product category pages saw a 31% traffic increase.
Diagram 4: Thematic Cluster Map
What It Represents:
Your content grouped by topic. Each cluster has a central node (pillar page) with supporting nodes (cluster articles) around it. Lines represent bidirectional links.
Why You Need It:
- Shows which topics you're covering and which you're not.
- Identifies weak clusters (few cluster articles or weak linking).
- Reveals clusters that are disconnected from each other.
How to Create It:
Tool: draw.io or Lucidchart.
Step-by-Step:
- Create a central circle for the pillar page of each topic.
- Around each pillar, create smaller circles for each cluster article.
- Draw bidirectional lines (arrows on both ends) between the pillar and each cluster.
- Add lines between related cluster articles within the same topic (contextual links).
- Use different background colors for different topic clusters.
- Label each circle with the page title or URL.
What to Look For:
- Clusters with only 1-2 articles. These are underdeveloped topics.
- Pillars with no return links. Cluster articles aren't linking back.
- Clusters with no cross-links. Articles within the same cluster are disconnected.
- Gaps between clusters. Topics that should be connected but aren't.
How to Interpret It:
A healthy cluster map shows well-developed clusters with strong bidirectional linking. Clusters that are related have some cross-linking. Every cluster has a clear pillar that's well-linked from the cluster articles.
A Real Example:
A client had a cluster map that showed their "SEO" cluster as disconnected from their "Content Marketing" cluster. The topics were related, but there were no links between them. We added contextual links between the two clusters and created a bridge pillar that covered both topics. Within 90 days, both clusters saw traffic increases of 18% and 22%.
You now have four diagrams that will transform how you see your site's internal linking. The tree diagram shows you structure. The heat map shows you distribution. The flow simulation shows you movement. The cluster map shows you themes.
Together, they give you a complete picture of your internal linking health.
In the next chapter, we'll cover the mistakes that bleed authority and how to fix them immediately.
But before you move on, here's your challenge:
Create at least one of these diagrams for your site this week. Start with the tree diagram — it's the easiest and most revealing. If you have time, create the heat map as well. Use what you see to identify one action you can take this week.